STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2732Putative membrane protein; Cation transport ATPase. (883 aa)    
Predicted Functional Partners:
CVAR_2929
Hypothetical protein.
 
 
 0.853
CVAR_2733
Putative membrane protein.
       0.832
CVAR_2734
Putative membrane protein.
       0.832
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.793
hemL
Glutamate-1-semialdehyde aminotransferase.
       0.779
CVAR_0789
Putative membrane protein; Cation transport ATPase.
 
 
 0.675
CVAR_2736
Predicted membrane protein.
  
  
 0.648
ccsX
Thiol-disulfide isomerase and thioredoxins.
   
 
 0.616
hemD
uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase; Uroporphyrinogen-III methylase.
  
  
 0.606
CVAR_2737
Hypothetical protein; ABC-type spermidine/putrescine transport systems, ATPase components.
       0.592
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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