STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2852ABC transport system permease protein / ATP-binding protein. (575 aa)    
Predicted Functional Partners:
CVAR_2853
ABC-type multidrug transport system, ATPase and permease components.
   
0.850
CVAR_0228
Putative membrane protein; ABC-type multidrug transport system, ATPase and permease components.
 
     0.786
CVAR_0450
Putative membrane protein; ABC-type multidrug transport system, ATPase and permease components.
    0.785
CVAR_1292
ABC transport system permease protein / ATP-binding protein; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
    0.779
CVAR_2851
Putative membrane protein; Permeases of the major facilitator superfamily.
       0.543
pks13
Polyketide synthase modules and related proteins.
  
 
 0.518
CVAR_2850
AraC-type DNA-binding domain-containing proteins.
 
    0.480
dnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.451
CVAR_2848
L-lysine 6-monooxygenase; Lysine/ornithine N-monooxygenase.
 
    0.420
arc
Hypothetical protein; ATPases of the AAA+ class.
  
 
  0.412
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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