STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcbRTranscriptional regulator. (234 aa)    
Predicted Functional Partners:
CVAR_2875
Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.534
tauR
Transcriptional regulator/sugar kinase.
  
  
 0.521
dtxR
Mn-dependent transcriptional regulator.
   
  
 0.494
CVAR_1986
Pyridoxine 5-phosphate oxidase; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.
  
     0.494
sepP
Putative serine proteinase precursor; Subtilisin-like serine proteases.
   
 
 0.484
lexA
SOS response regulatory protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
      
 0.444
pipB
Proline imino-peptidase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
  
 0.436
pepI
Proline iminopeptidase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Belongs to the peptidase S33 family.
   
  
 0.436
tauD1
Alkanesulfonate monooxygenase; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin- dependent oxidoreductases.
      
 0.430
tauD2
Probable taurine catabolism dioxygenase.
      
 0.430
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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