STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabR2DNA-binding transcription regulator; Regulator of polyketide synthase expression. (485 aa)    
Predicted Functional Partners:
gabT2
Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.843
gabP2
4-amino butyrate transport carrier; Gamma-aminobutyrate permease and related permeases.
     
 0.738
gabT1
Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.657
purR
Purine catabolism regulatory protein; Regulator of polyketide synthase expression.
  
     0.645
CVAR_3004
Universal stress protein UspA and related nucleotide-binding proteins.
 
     0.623
ramA
LuxR DNA-binding transcription regulator; DNA-binding HTH domain-containing proteins.
  
    0.532
CVAR_2228
Hypothetical protein.
  
     0.497
CVAR_1194
Hypothetical protein; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
     0.481
gabR3
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.448
gabD1
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
 0.441
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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