Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CVAR_0341 | puo | CVAR_0341 | CVAR_2956 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Monoamine oxidase. | 0.908 |
| CVAR_0341 | putA | CVAR_0341 | CVAR_0183 | Hypothetical protein; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | NAD-dependent aldehyde dehydrogenases. | 0.860 |
| CVAR_0846 | dnaN | CVAR_0846 | CVAR_0002 | Hypothetical protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.911 |
| CVAR_0846 | helZ | CVAR_0846 | CVAR_1846 | Hypothetical protein. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.816 |
| CVAR_0846 | mtrB | CVAR_0846 | CVAR_2171 | Hypothetical protein. | Two-component system sensor kinase; Signal transduction histidine kinase. | 0.569 |
| CVAR_0846 | puo | CVAR_0846 | CVAR_2956 | Hypothetical protein. | Monoamine oxidase. | 0.471 |
| CVAR_1033 | CVAR_3004 | CVAR_1033 | CVAR_3004 | Putative membrane protein; Amino acid transporters. | Universal stress protein UspA and related nucleotide-binding proteins. | 0.409 |
| CVAR_1033 | puo | CVAR_1033 | CVAR_2956 | Putative membrane protein; Amino acid transporters. | Monoamine oxidase. | 0.530 |
| CVAR_2955 | puo | CVAR_2955 | CVAR_2956 | Transcriptional regulator. | Monoamine oxidase. | 0.848 |
| CVAR_3004 | CVAR_1033 | CVAR_3004 | CVAR_1033 | Universal stress protein UspA and related nucleotide-binding proteins. | Putative membrane protein; Amino acid transporters. | 0.409 |
| CVAR_3004 | puo | CVAR_3004 | CVAR_2956 | Universal stress protein UspA and related nucleotide-binding proteins. | Monoamine oxidase. | 0.442 |
| dnaN | CVAR_0846 | CVAR_0002 | CVAR_0846 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.911 |
| dnaN | helZ | CVAR_0002 | CVAR_1846 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Superfamily II DNA/RNA helicases, SNF2 family. | 0.816 |
| dnaN | mtrB | CVAR_0002 | CVAR_2171 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Two-component system sensor kinase; Signal transduction histidine kinase. | 0.629 |
| dnaN | puo | CVAR_0002 | CVAR_2956 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Monoamine oxidase. | 0.471 |
| helZ | CVAR_0846 | CVAR_1846 | CVAR_0846 | Superfamily II DNA/RNA helicases, SNF2 family. | Hypothetical protein. | 0.816 |
| helZ | dnaN | CVAR_1846 | CVAR_0002 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.816 |
| helZ | puo | CVAR_1846 | CVAR_2956 | Superfamily II DNA/RNA helicases, SNF2 family. | Monoamine oxidase. | 0.871 |
| mtrB | CVAR_0846 | CVAR_2171 | CVAR_0846 | Two-component system sensor kinase; Signal transduction histidine kinase. | Hypothetical protein. | 0.569 |
| mtrB | dnaN | CVAR_2171 | CVAR_0002 | Two-component system sensor kinase; Signal transduction histidine kinase. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.629 |
page 1 of 2