STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2987Transcriptional regulator. (276 aa)    
Predicted Functional Partners:
fadE9
Acyl-CoA dehydrogenases.
 
     0.684
CVAR_2985
Transcriptional regulator.
 
    
0.613
CVAR_2721
Hypothetical protein; Fatty acid desaturase.
  
  
 0.547
CVAR_2991
Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.512
rubA
High molecular weight rubredoxin.
  
     0.480
lipA1
Triacylglycerol lipase precursor; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
  
     0.461
lip4
Triacylglycerol lipase; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
  
   
 0.449
CVAR_1232
Hypothetical protein; Acyl dehydratase.
  
     0.427
fadD4
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     
 0.419
alkB
Alkane 1-monooxygenase.
  
    0.406
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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