STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_2991Uncharacterized protein, possibly involved in aromatic compounds catabolism. (164 aa)    
Predicted Functional Partners:
fas
Fatty acid synthase; Enoyl reductase domain of yeast-type FAS1.
 
  
 0.745
CVAR_2721
Hypothetical protein; Fatty acid desaturase.
  
  
 0.736
rubA
High molecular weight rubredoxin.
  
     0.706
CVAR_2565
Short chain dehydrogenase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.687
CVAR_0423
Hypothetical protein; Phosphoglycerate mutase 1; Belongs to the phosphoglycerate mutase family.
 
     0.664
fadE2
Acyl-CoA dehydrogenases.
 
  
 0.662
trxA
Thioredoxin; Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
    0.653
nrpS2
Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.624
alkB
Alkane 1-monooxygenase.
  
  
 0.565
fadH
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
   
 0.565
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.