STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_3019Putative secreted protein; Phage-related protein, tail component. (805 aa)    
Predicted Functional Partners:
CVAR_3020
Uncharacterized membrane protein, putative virulence factor.
 
   
 0.870
CVAR_3018
Hypothetical protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
  
 0.824
embB
Arabinosyl transferase.
  
 
 
 0.806
CVAR_1447
Hypothetical protein.
  
   
 0.779
CVAR_2150
Hypothetical protein; Predicted GTPase.
  
    0.778
CVAR_0212
Putative secreted protein.
  
     0.774
CVAR_1789
Predicted membrane protein.
  
   
 0.774
CVAR_0407
Hypothetical protein.
  
     0.773
CVAR_0915
Putative membrane protein.
  
     0.773
CVAR_2296
Hypothetical protein; Esterase/lipase.
  
     0.772
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.