STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVAR_3020Uncharacterized membrane protein, putative virulence factor. (1066 aa)    
Predicted Functional Partners:
CVAR_0067
Hypothetical protein; FOG: FHA domain.
  
 
 
 0.999
CVAR_3019
Putative secreted protein; Phage-related protein, tail component.
 
   
 0.870
holA
DNA polymerase III, delta subunit.
  
  
 0.791
CVAR_0004
Hypothetical protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
      
 0.768
CVAR_1610
Putative membrane protein.
  
     0.706
CVAR_1210
Putative membrane protein.
  
     0.704
odhI
Inhibitor of ODH activity; FOG: FHA domain.
  
 
 
 0.692
CVAR_2112
Putative secreted protein.
  
     0.680
aftA
Arabinofuranosyltransferase A.
  
     0.668
CVAR_1783
Hypothetical protein.
  
     0.666
Your Current Organism:
Corynebacterium variabile
NCBI taxonomy Id: 858619
Other names: C. variabile DSM 44702, Corynebacterium variabile CIP 107183, Corynebacterium variabile DSM 44702, Corynebacterium variabile LMG S-19265, Corynebacterium variabile str. DSM 44702, Corynebacterium variabile strain DSM 44702
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.