STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB02433.1Transcriptional regulator, AraC family. (285 aa)    
Predicted Functional Partners:
SDB02534.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
  
 0.816
SDB11862.1
Transcriptional regulator, XRE family with cupin sensor.
 
 
 0.716
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.563
SDB42140.1
AraC-type DNA-binding protein.
 
 
 
 0.547
SDB12912.1
Cupin domain-containing protein.
  
 
 0.523
SDB27836.1
Transcriptional regulator, LacI family.
  
  
 0.452
SDB17079.1
ThiF family protein.
  
  
 0.436
SDB13232.1
Two-component system, sensor histidine kinase YesM.
 
   
 0.433
SDB02459.1
Surfactin synthase thioesterase subunit.
 
     0.427
SDB08030.1
Transcriptional regulator, XRE family with cupin sensor.
 
  
 0.423
Your Current Organism:
Fusobacterium necrophorum
NCBI taxonomy Id: 859
Other names: ATCC 25286, Acinomyces pseudonecrophorus, Actinomyces necrophorus, Bacillus necrophorus, Bacillus necroseos, Bacillus necrosus, Bacterium necrophorum, Bacteroides necrophorus, CCUG 9994, CIP 104559, Corynebacterium necrophorum, DSM 21784, F. necrophorum, Fusibacterium necrophorum, Fusiformis hemolyticus, Fusiformis necrophorus, JCM 3718, NCTC 13726, Necrobacterium necrophorus, Proactinomyces necrophorus, Sphaerophorus necrophorus, Sphaerophorus pseudonecrophorus, Streptothrix necrophorus, Streptothrix necuphtora, VPI 2891
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.