Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DnaN | DnaN-2 | SAMN02983009_00140 | SAMN02983009_00743 | DNA polymerase-3 subunit beta. | DNA polymerase-3 subunit beta. | 0.918 |
DnaN | MutL | SAMN02983009_00140 | SAMN02983009_00627 | DNA polymerase-3 subunit beta. | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | 0.846 |
DnaN | SDB18289.1 | SAMN02983009_00140 | SAMN02983009_00858 | DNA polymerase-3 subunit beta. | MutS domain V. | 0.824 |
DnaN | mutS | SAMN02983009_00140 | SAMN02983009_01024 | DNA polymerase-3 subunit beta. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.824 |
DnaN | polA | SAMN02983009_00140 | SAMN02983009_01227 | DNA polymerase-3 subunit beta. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
DnaN-2 | DnaN | SAMN02983009_00743 | SAMN02983009_00140 | DNA polymerase-3 subunit beta. | DNA polymerase-3 subunit beta. | 0.918 |
DnaN-2 | MutL | SAMN02983009_00743 | SAMN02983009_00627 | DNA polymerase-3 subunit beta. | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | 0.846 |
DnaN-2 | SDB18289.1 | SAMN02983009_00743 | SAMN02983009_00858 | DNA polymerase-3 subunit beta. | MutS domain V. | 0.824 |
DnaN-2 | mutS | SAMN02983009_00743 | SAMN02983009_01024 | DNA polymerase-3 subunit beta. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.824 |
DnaN-2 | polA | SAMN02983009_00743 | SAMN02983009_01227 | DNA polymerase-3 subunit beta. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
MutL | DnaN | SAMN02983009_00627 | SAMN02983009_00140 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | DNA polymerase-3 subunit beta. | 0.846 |
MutL | DnaN-2 | SAMN02983009_00627 | SAMN02983009_00743 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | DNA polymerase-3 subunit beta. | 0.846 |
MutL | SDB18289.1 | SAMN02983009_00627 | SAMN02983009_00858 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | MutS domain V. | 0.983 |
MutL | SDB26982.1 | SAMN02983009_00627 | SAMN02983009_01286 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.733 |
MutL | mutS | SAMN02983009_00627 | SAMN02983009_01024 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.988 |
MutL | polA | SAMN02983009_00627 | SAMN02983009_01227 | DNA mismatch repair protein MutL; Belongs to the DNA mismatch repair MutL/HexB family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.962 |
SDB18255.1 | SDB18283.1 | SAMN02983009_00855 | SAMN02983009_00857 | L-erythro-3,5-diaminohexanoate dehydrogenase. | Hypothetical protein. | 0.900 |
SDB18255.1 | SDB18289.1 | SAMN02983009_00855 | SAMN02983009_00858 | L-erythro-3,5-diaminohexanoate dehydrogenase. | MutS domain V. | 0.865 |
SDB18255.1 | SDB18301.1 | SAMN02983009_00855 | SAMN02983009_00859 | L-erythro-3,5-diaminohexanoate dehydrogenase. | Beta-lysine 5,6-aminomutase alpha subunit. | 0.989 |
SDB18255.1 | SDB18312.1 | SAMN02983009_00855 | SAMN02983009_00860 | L-erythro-3,5-diaminohexanoate dehydrogenase. | Beta-lysine 5,6-aminomutase beta subunit. | 0.989 |
page 1 of 3