Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DprA | SDB35487.1 | SAMN02983009_01705 | SAMN02983009_01704 | DNA processing protein. | Tetratricopeptide repeat-containing protein. | 0.744 |
DprA | TopA | SAMN02983009_01705 | SAMN02983009_01706 | DNA processing protein. | DNA topoisomerase-1. | 0.943 |
DprA | UvrB | SAMN02983009_01705 | SAMN02983009_01702 | DNA processing protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.728 |
DprA | xseA | SAMN02983009_01705 | SAMN02983009_01703 | DNA processing protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.727 |
HtpG | SDB35487.1 | SAMN02983009_01349 | SAMN02983009_01704 | Molecular chaperone HtpG. | Tetratricopeptide repeat-containing protein. | 0.877 |
HtpG | dnaK | SAMN02983009_01349 | SAMN02983009_02104 | Molecular chaperone HtpG. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.998 |
RpoB | RpoZ | SAMN02983009_01192 | SAMN02983009_01188 | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
RpoB | SDB21533.1 | SAMN02983009_01192 | SAMN02983009_01027 | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | alanyl-tRNA synthetase. | 0.425 |
RpoB | SDB35487.1 | SAMN02983009_01192 | SAMN02983009_01704 | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | Tetratricopeptide repeat-containing protein. | 0.803 |
RpoB | dnaK | SAMN02983009_01192 | SAMN02983009_02104 | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.633 |
RpoB | rpoA | SAMN02983009_01192 | SAMN02983009_02118 | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
RpoZ | RpoB | SAMN02983009_01188 | SAMN02983009_01192 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | 0.999 |
RpoZ | SDB35487.1 | SAMN02983009_01188 | SAMN02983009_01704 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Tetratricopeptide repeat-containing protein. | 0.784 |
RpoZ | rpoA | SAMN02983009_01188 | SAMN02983009_02118 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SDB21533.1 | RpoB | SAMN02983009_01027 | SAMN02983009_01192 | alanyl-tRNA synthetase. | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | 0.425 |
SDB21533.1 | SDB35487.1 | SAMN02983009_01027 | SAMN02983009_01704 | alanyl-tRNA synthetase. | Tetratricopeptide repeat-containing protein. | 0.911 |
SDB35487.1 | DprA | SAMN02983009_01704 | SAMN02983009_01705 | Tetratricopeptide repeat-containing protein. | DNA processing protein. | 0.744 |
SDB35487.1 | HtpG | SAMN02983009_01704 | SAMN02983009_01349 | Tetratricopeptide repeat-containing protein. | Molecular chaperone HtpG. | 0.877 |
SDB35487.1 | RpoB | SAMN02983009_01704 | SAMN02983009_01192 | Tetratricopeptide repeat-containing protein. | DNA-directed RNA polymerase subunit beta; Belongs to the RNA polymerase beta chain family. | 0.803 |
SDB35487.1 | RpoZ | SAMN02983009_01704 | SAMN02983009_01188 | Tetratricopeptide repeat-containing protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.784 |
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