STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB38558.1ATP-binding cassette, subfamily B. (629 aa)    
Predicted Functional Partners:
SDB33892.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
   
0.900
SDB38572.1
ATP-binding cassette, subfamily B.
 
    
0.836
SDB02534.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.641
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.639
SDB42313.1
ATP-binding cassette, subfamily B.
  
0.545
fbpC
iron(III) transport system ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
   
0.535
SDB22125.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
   
 0.473
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.448
SDB29803.1
Multiple sugar transport system ATP-binding protein.
 
 
   
0.406
SDB17079.1
ThiF family protein.
  
 0.404
Your Current Organism:
Fusobacterium necrophorum
NCBI taxonomy Id: 859
Other names: ATCC 25286, Acinomyces pseudonecrophorus, Actinomyces necrophorus, Bacillus necrophorus, Bacillus necroseos, Bacillus necrosus, Bacterium necrophorum, Bacteroides necrophorus, CCUG 9994, CIP 104559, Corynebacterium necrophorum, DSM 21784, F. necrophorum, Fusibacterium necrophorum, Fusiformis hemolyticus, Fusiformis necrophorus, JCM 3718, NCTC 13726, Necrobacterium necrophorus, Proactinomyces necrophorus, Sphaerophorus necrophorus, Sphaerophorus pseudonecrophorus, Streptothrix necrophorus, Streptothrix necuphtora, VPI 2891
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