STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB39676.1dTDP-4-amino-4,6-dideoxygalactose transaminase. (407 aa)    
Predicted Functional Partners:
SDB39663.1
Sugar transferase.
  
    0.773
SDB39695.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.772
SDB41669.1
Polysaccharide biosynthesis protein.
 
  
 0.758
SDB02534.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.618
SDB39728.1
EpsG family protein.
  
    0.608
SDB39795.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing).
  
  
 0.592
SDB39711.1
Hypothetical protein.
  
    0.576
SDB41766.1
Predicted dehydrogenase.
 
  
 0.543
SDB39778.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.496
SDB41903.1
dTDP-glucose 4,6-dehydratase.
 
  
 0.464
Your Current Organism:
Fusobacterium necrophorum
NCBI taxonomy Id: 859
Other names: ATCC 25286, Acinomyces pseudonecrophorus, Actinomyces necrophorus, Bacillus necrophorus, Bacillus necroseos, Bacillus necrosus, Bacterium necrophorum, Bacteroides necrophorus, CCUG 9994, CIP 104559, Corynebacterium necrophorum, DSM 21784, F. necrophorum, Fusibacterium necrophorum, Fusiformis hemolyticus, Fusiformis necrophorus, JCM 3718, NCTC 13726, Necrobacterium necrophorus, Proactinomyces necrophorus, Sphaerophorus necrophorus, Sphaerophorus pseudonecrophorus, Streptothrix necrophorus, Streptothrix necuphtora, VPI 2891
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.