STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB41448.1Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family. (63 aa)    
Predicted Functional Partners:
SDB41461.1
Predicted nuclease of the RNAse H fold, HicB family.
 
 
 
 0.994
SDB02296.1
Predicted nucleotidyltransferase component of viral defense system.
  
     0.536
SDB41434.1
Hypothetical protein.
       0.526
SDB41360.1
Phage uncharacterized protein (putative large terminase), C-terminal domain-containing protein.
 
     0.512
SDB41420.1
Hypothetical protein.
       0.500
SDB41474.1
Hypothetical protein.
       0.436
SDB44342.1
Phage tail tape measure protein, TP901 family, core region.
  
     0.411
Your Current Organism:
Fusobacterium necrophorum
NCBI taxonomy Id: 859
Other names: ATCC 25286, Acinomyces pseudonecrophorus, Actinomyces necrophorus, Bacillus necrophorus, Bacillus necroseos, Bacillus necrosus, Bacterium necrophorum, Bacteroides necrophorus, CCUG 9994, CIP 104559, Corynebacterium necrophorum, DSM 21784, F. necrophorum, Fusibacterium necrophorum, Fusiformis hemolyticus, Fusiformis necrophorus, JCM 3718, NCTC 13726, Necrobacterium necrophorus, Proactinomyces necrophorus, Sphaerophorus necrophorus, Sphaerophorus pseudonecrophorus, Streptothrix necrophorus, Streptothrix necuphtora, VPI 2891
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