STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB41726.1dTDP-4-amino-4,6-dideoxygalactose transaminase. (396 aa)    
Predicted Functional Partners:
SDB41766.1
Predicted dehydrogenase.
 
  
 0.935
SDB41669.1
Polysaccharide biosynthesis protein.
 
  
 0.880
SDB41754.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.880
SDB41740.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
   0.848
SDB41710.1
UDP-N-acetyl-D-galactosamine dehydrogenase.
  
  
 0.846
SDB41683.1
Aminotransferase, LLPSF_NHT_00031 family.
 
    
0.774
SDB41701.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
    0.753
SDB41779.1
Hypothetical protein.
  
    0.705
SDB02534.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.618
SDB41903.1
dTDP-glucose 4,6-dehydratase.
 
  
 0.470
Your Current Organism:
Fusobacterium necrophorum
NCBI taxonomy Id: 859
Other names: ATCC 25286, Acinomyces pseudonecrophorus, Actinomyces necrophorus, Bacillus necrophorus, Bacillus necroseos, Bacillus necrosus, Bacterium necrophorum, Bacteroides necrophorus, CCUG 9994, CIP 104559, Corynebacterium necrophorum, DSM 21784, F. necrophorum, Fusibacterium necrophorum, Fusiformis hemolyticus, Fusiformis necrophorus, JCM 3718, NCTC 13726, Necrobacterium necrophorus, Proactinomyces necrophorus, Sphaerophorus necrophorus, Sphaerophorus pseudonecrophorus, Streptothrix necrophorus, Streptothrix necuphtora, VPI 2891
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