Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDB47668.1 | SDB47679.1 | SAMN02983009_02303 | SAMN02983009_02304 | Hypothetical protein. | Radical SAM family uncharacterized protein. | 0.705 |
SDB47668.1 | SDB47708.1 | SAMN02983009_02303 | SAMN02983009_02306 | Hypothetical protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | 0.620 |
SDB47668.1 | SDB47731.1 | SAMN02983009_02303 | SAMN02983009_02308 | Hypothetical protein. | Diaminopimelate epimerase. | 0.455 |
SDB47668.1 | kdsA | SAMN02983009_02303 | SAMN02983009_02307 | Hypothetical protein. | 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family. | 0.620 |
SDB47668.1 | ung | SAMN02983009_02303 | SAMN02983009_02305 | Hypothetical protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.681 |
SDB47679.1 | SDB47668.1 | SAMN02983009_02304 | SAMN02983009_02303 | Radical SAM family uncharacterized protein. | Hypothetical protein. | 0.705 |
SDB47679.1 | SDB47708.1 | SAMN02983009_02304 | SAMN02983009_02306 | Radical SAM family uncharacterized protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | 0.684 |
SDB47679.1 | SDB47731.1 | SAMN02983009_02304 | SAMN02983009_02308 | Radical SAM family uncharacterized protein. | Diaminopimelate epimerase. | 0.493 |
SDB47679.1 | kdsA | SAMN02983009_02304 | SAMN02983009_02307 | Radical SAM family uncharacterized protein. | 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family. | 0.677 |
SDB47679.1 | ung | SAMN02983009_02304 | SAMN02983009_02305 | Radical SAM family uncharacterized protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.746 |
SDB47708.1 | SDB47668.1 | SAMN02983009_02306 | SAMN02983009_02303 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | Hypothetical protein. | 0.620 |
SDB47708.1 | SDB47679.1 | SAMN02983009_02306 | SAMN02983009_02304 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | Radical SAM family uncharacterized protein. | 0.684 |
SDB47708.1 | SDB47731.1 | SAMN02983009_02306 | SAMN02983009_02308 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | Diaminopimelate epimerase. | 0.637 |
SDB47708.1 | kdsA | SAMN02983009_02306 | SAMN02983009_02307 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family. | 0.785 |
SDB47708.1 | ung | SAMN02983009_02306 | SAMN02983009_02305 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.703 |
SDB47731.1 | SDB47668.1 | SAMN02983009_02308 | SAMN02983009_02303 | Diaminopimelate epimerase. | Hypothetical protein. | 0.455 |
SDB47731.1 | SDB47679.1 | SAMN02983009_02308 | SAMN02983009_02304 | Diaminopimelate epimerase. | Radical SAM family uncharacterized protein. | 0.493 |
SDB47731.1 | SDB47708.1 | SAMN02983009_02308 | SAMN02983009_02306 | Diaminopimelate epimerase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Belongs to the MurCDEF family. MurE subfamily. | 0.637 |
SDB47731.1 | kdsA | SAMN02983009_02308 | SAMN02983009_02307 | Diaminopimelate epimerase. | 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family. | 0.573 |
SDB47731.1 | ung | SAMN02983009_02308 | SAMN02983009_02305 | Diaminopimelate epimerase. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.508 |
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