STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0016Predicted coding region HP0016; Hypothetical protein; identified by GeneMark; putative. (87 aa)    
Predicted Functional Partners:
HP_0015
Predicted coding region HP0015; Hypothetical protein; identified by GeneMark; putative.
     
 0.879
HP_0017
virB4 homolog (virB4); Similar to SP:P17794 PID:154786 PID:39156 percent identity: 25.23; identified by sequence similarity; putative.
  
  
 0.823
HP_0014
Predicted coding region HP0014; Hypothetical protein; identified by GeneMark; putative.
     
 0.612
HP_0228
Conserved hypothetical integral membrane protein; Similar to SP:P55189 PID:1256150 GB:AL009126 percent identity: 43.27; identified by sequence similarity; putative.
    
 
 0.553
HP_0013
Predicted coding region HP0013; Hypothetical protein; identified by GeneMark; putative.
     
 0.542
dnaG
DNA primase (dnaG); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.433
HP_0018
Predicted coding region HP0018; Hypothetical protein; identified by GeneMark; putative.
       0.421
HP_0038
Predicted coding region HP0038; Hypothetical protein; identified by GeneMark; putative.
   
   0.401
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.