STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0052Predicted coding region HP0052; Hypothetical protein; identified by GeneMark; putative. (330 aa)    
Predicted Functional Partners:
HP_0051
Cytosine specific DNA methyltransferase (DDEM); Similar to SP:P05302 percent identity: 38.97; identified by sequence similarity; putative.
     
 0.758
HP_0054
Adenine/cytosine DNA methyltransferase; Similar to SP:P25282 GB:D17388 GB:D90363 PID:216711 PID:435623 percent identity: 32.12; identified by sequence similarity; putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.728
HP_0050
Adenine specific DNA methyltransferase (dpnA); Similar to SP:P09358 GB:S56948 PID:153610 percent identity: 37.02; identified by sequence similarity; putative; Belongs to the N(4)/N(6)-methyltransferase family.
     
 0.724
HP_0053
Predicted coding region HP0053; Hypothetical protein; identified by GeneMark; putative.
     
 0.686
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.