STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureGUrease accessory protein (ureG); Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. (199 aa)    
Predicted Functional Partners:
ureH
Urease accessory protein (ureH); Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 0.999
ureF
Urease accessory protein (ureF); Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 0.999
ureE
Urease accessory protein (ureE); Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly.
 
 0.999
ureB
Urease beta subunit (urea amidohydrolase) (ureB); Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
 0.999
ureA
Urease alpha subunit (ureA) (urea amidohydrolase); Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach; In the N-terminal section; belongs to the urease gamma subunit family.
 
 0.999
ureI
Urease accessory protein (ureI); Functions as a specific, H(+)-activated urea channel that increases the rate of urea entry into the cytoplasm, resulting in activation of cytoplasmic urease at acidic medium pH. Is essential for H.pylori gastric survival and colonization. Is necessary for the adaptation of urease activity to the extracellular pH, as in the presence of urea, UreI rapidly enhances the production of ammonia in the extracellular medium when the pH of the medium was decreased to pH5 or below.
  
 
 0.990
glmM
Urease protein (ureC); Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
 0.936
hypA
Hydrogenase expression/formation protein (hypA); Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. Is also required for urease maturation.
  
 
 0.846
slyD
Peptidyl-prolyl cis-trans isomerase, FKBP-type rotamase (slyD); Folding helper with both chaperone and peptidyl-prolyl cis- trans isomerase (PPIase) activities. Chaperone activity prevents aggregation of unfolded or partially folded proteins and promotes their correct folding. PPIases catalyze the cis-trans isomerization of Xaa- Pro bonds of peptides, which accelerates slow steps of protein folding and thus shortens the lifetime of intermediates. Both strategies lower the concentration of intermediates and increase the productivity and yield of the folding reaction (By similarity); Bel [...]
   
 
 0.843
HP_0899
Hydrogenase expression/formation protein (hypC); Similar to GB:L77117 SP:Q57653 PID:1498975 percent identity: 38.46; identified by sequence similarity; putative.
  
  
 0.766
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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