Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmFRibosomal protein L32 (rpl32); Similar to SP:P07840 percent identity: 41.67; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL32 family. (48 aa)    
Predicted Functional Partners:
rplU
Ribosomal protein L21 (rpl21); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.994
rplL
Ribosomal protein L7/L12 (rpl7/l12); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.
  
 0.994
rpsB
Ribosomal protein S2 (rps2); Similar to GB:D26562 SP:P02351 GB:V00343 PID:42842 PID:473824 percent identity: 49.58; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS2 family.
  
 0.994
rpmB
Ribosomal protein L28 (rpL28); Similar to GB:L43967 SP:P47665 PID:1046142 percent identity: 41.67; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.993
rpsT
Ribosomal protein S20 (rps20); Binds directly to 16S ribosomal RNA.
   
 
 0.992
rplT
Ribosomal protein L20 (rpl20); Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).
  
 0.992
rpsP
Ribosomal protein S16 (rpS16); Similar to GB:L42023 SP:P44382 PID:1003307 PID:1222122 PID:1204461 percent identity: 46.75; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.992
rpmI
Ribosomal protein L35 (rpl35); Similar to PID:1171433 SP:P52830 percent identity: 50.82; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.991
rpmG
Ribosomal protein L33 (rpL33); Similar to SP:P23375 percent identity: 55.10; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.991
rpsF
Ribosomal protein S6 (rps6); Binds together with S18 to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS6 family.
  
 
 0.991
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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