Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HP_0299Dipeptide ABC transporter, permease protein (dppB); Similar to SP:P37316 PID:349226 PID:466682 GB:U00096 PID:1789965 percent identity: 49.25; identified by sequence similarity; putative. (334 aa)    
Predicted Functional Partners:
HP_0298
Dipeptide ABC transporter, periplasmic dipeptide-binding protein (dppA); Similar to SP:P23847 GB:M35045 GB:X58051 PID:145797 PID:349225 percent identity: 39.84; identified by sequence similarity; putative.
 0.999
HP_0300
Dipeptide ABC transporter, permease protein (dppC); Similar to SP:P37315 PID:349227 PID:466681 GB:U00096 PID:1789964 percent identity: 52.78; identified by sequence similarity; putative.
 0.999
HP_0301
Dipeptide ABC transporter, ATP-binding protein (dppD); Similar to SP:P42064 PID:677943 GB:AL009126 percent identity: 59.46; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 0.999
HP_0302
Dipeptide ABC transporter, ATP-binding protein (dppF); Similar to SP:P37313 GB:L08399 PID:466679 PID:349229 GB:U00096 percent identity: 54.75; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 0.999
HP_0250
Oligopeptide ABC transporter, ATP-binding protein (oppD); Similar to GP:1736845 percent identity: 39.06; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 0.957
HP_1252
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (oppA); Similar to SP:P42061 PID:677945 GB:AL009126 percent identity: 28.71; identified by sequence similarity; putative.
  
 
 0.946
obg
GTP-binding protein (obg); An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
     
 0.758
HP_0251
Oligopeptide ABC transporter, permease protein (oppC); Similar to GP:1787498 percent identity: 31.41; identified by sequence similarity; putative.
   
 0.612
rpmA
Ribosomal protein L27 (rpl27); Similar to GB:L42023 SP:P44363 PID:1005959 PID:1220982 PID:1205126 percent identity: 64.71; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL27 family.
       0.602
rplU
Ribosomal protein L21 (rpl21); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.585
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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