STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0424Predicted coding region HP0424; Hypothetical protein; identified by GeneMark; putative. (619 aa)    
Predicted Functional Partners:
queH
Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueH family.
    
   0.769
HP_1287
Transcriptional regulator (tenA); Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.
    
   0.769
HP_1530
Purine nucleoside phosphorylase (punB); Similar to GP:1638807 percent identity: 20.67; identified by sequence similarity; putative.
    
   0.769
HP_0425
Predicted coding region HP0425; Hypothetical protein; identified by GeneMark; putative.
       0.642
HP_0426
Predicted coding region HP0426; Hypothetical protein; identified by GeneMark; putative.
  
    0.542
HP_0423
Predicted coding region HP0423; Hypothetical protein; identified by GeneMark; putative.
       0.509
HP_0427
Predicted coding region HP0427; Hypothetical protein; identified by GeneMark; putative.
       0.443
HP_0993
Predicted coding region HP0993; Hypothetical protein; identified by GeneMark; putative.
   
  
 0.414
HP_0456
Predicted coding region HP0456; Hypothetical protein; identified by GeneMark; putative.
   
  
 0.413
HP_0704
Predicted coding region HP0704; Hypothetical protein; identified by GeneMark; putative.
      
 0.412
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.