STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0580Predicted coding region HP0580; Hypothetical protein; identified by GeneMark; putative. (372 aa)    
Predicted Functional Partners:
HP_0579
Predicted coding region HP0579; Hypothetical protein; identified by GeneMark; putative.
  
 
 0.994
eptA
Conserved hypothetical integral membrane protein; Probably catalyzes the addition of a phosphoethanolamine moiety to the dephosphorylated 1-position of the disaccharide backbone of lipid A. Lipid A that is 1-phosphorylated is not a substrate for this enzyme; Belongs to the phosphoethanolamine transferase family. EptA subfamily.
     
 0.941
HP_1580
Predicted coding region HP1580; Hypothetical protein; identified by GeneMark; putative.
     
 0.937
HP_0578
Predicted coding region HP0578; Hypothetical protein; identified by GeneMark; putative.
  
    0.832
pyrC-2
Dihydroorotase (pyrC); Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.781
HP_0583
Predicted coding region HP0583; Hypothetical protein; identified by GeneMark; putative.
  
    0.774
HP_0582
Predicted coding region HP0582; Hypothetical protein; identified by GeneMark; putative.
       0.773
HP_0584
Flagellar switch protein (fliN); Similar to PID:1165262 PID:1185057 SP:Q44903 GB:AE000783 percent identity: 39.73; identified by sequence similarity; putative.
       0.773
folD
Methylene-tetrahydrofolate dehydrogenase (folD); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.570
lepB
Signal peptidase I (lepB); Similar to GB:L42023 SP:P44454 PID:1004130 PID:1221918 PID:1204273 percent identity: 40.34; identified by sequence similarity; putative; Belongs to the peptidase S26 family.
  
    0.569
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.