STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0888iron(III) dicitrate ABC transporter, ATP-binding protein (fecE); Part of a binding-protein-dependent transport system for an iron chelatin. Probably responsible for energy coupling to the transport system (Potential); Belongs to the ABC transporter superfamily. (255 aa)    
Predicted Functional Partners:
HP_0889
iron(III) dicitrate ABC transporter, permease protein (fecD); Part of a binding-protein-dependent transport system for an iron chelatin; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.999
HP_1561
iron(III) ABC transporter, periplasmic iron-binding protein (ceuE); Similar to PID:1107531 percent identity: 27.52; identified by sequence similarity; putative.
 
 0.993
HP_1562
iron(III) ABC transporter, periplasmic iron-binding protein (ceuE); Similar to PID:1107531 percent identity: 28.17; identified by sequence similarity; putative.
 
 0.993
vdlC
Conserved hypothetical protein; Similar to GP:1786701 percent identity: 35.18; identified by sequence similarity; putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.786
HP_0715
ABC transporter, ATP-binding protein; Similar to GB:M24926 SP:P25885 PID:511887 percent identity: 52.32; identified by sequence similarity; putative.
  
  
 
0.640
HP_0613
ABC transporter, ATP-binding protein; Similar to PID:575301 PID:805090 percent identity: 31.07; identified by sequence similarity; putative.
  
     0.621
HP_0362
Conserved hypothetical integral membrane protein; Similar to GB:L42023 SP:P45333 PID:1008751 PID:1205933 PID:1221857 percent identity: 28.83; identified by sequence similarity; putative.
     
  0.617
HP_1498
Predicted coding region HP1498; Hypothetical protein; identified by GeneMark; putative.
     
  0.617
vdlD
Conserved hypothetical protein; Similar to PID:1063246 SP:P49851 GB:AL009126 percent identity: 34.48; identified by sequence similarity; putative; Belongs to the acyl coenzyme A hydrolase family.
       0.488
HP_0876
Iron-regulated outer membrane protein (frpB); Similar to PID:1052770 percent identity: 27.60; identified by sequence similarity; putative.
 
  
 0.470
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.