Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
vdlDConserved hypothetical protein; Similar to PID:1063246 SP:P49851 GB:AL009126 percent identity: 34.48; identified by sequence similarity; putative; Belongs to the acyl coenzyme A hydrolase family. (174 aa)    
Predicted Functional Partners:
vdlC
Conserved hypothetical protein; Similar to GP:1786701 percent identity: 35.18; identified by sequence similarity; putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.494
HP_0888
iron(III) dicitrate ABC transporter, ATP-binding protein (fecE); Part of a binding-protein-dependent transport system for an iron chelatin. Probably responsible for energy coupling to the transport system (Potential); Belongs to the ABC transporter superfamily.
       0.490
HP_0889
iron(III) dicitrate ABC transporter, permease protein (fecD); Part of a binding-protein-dependent transport system for an iron chelatin; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.484
fabI
Enoyl-(acyl-carrier-protein) reductase (NADH) (fabI); Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). Involved in the elongation cycle of fatty acid which are used in the lipid metabolism (By similarity); Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.
   
    0.473
HP_0509
Glycolate oxidase subunit (glcD); Similar to GP:1763300 percent identity: 98.01; identified by sequence similarity; putative.
    
   0.400
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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