Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HP_0909Predicted coding region HP0909; Hypothetical protein; identified by GeneMark; putative. (201 aa)    
Predicted Functional Partners:
HP_0910
Adenine specific DNA methyltransferase (HINDIIM); Similar to GB:L42023 SP:P44414 PID:1003910 PID:1222446 PID:1204764 percent identity: 33.44; identified by sequence similarity; putative.
     
 0.912
HP_0911
Rep helicase, single-stranded DNA-dependent ATPase (rep); Similar to GB:L42023 SP:P44804 PID:1005514 PID:1220733 PID:1204900 percent identity: 33.79; identified by sequence similarity; putative.
       0.773
HP_0907
Hook assembly protein, flagella (flgD); Required for flagellar hook formation. May act as a scaffolding protein.
       0.610
HP_0908
Flagellar hook (flgE); Similar to PID:600724 SP:P50610 GB:AE000511 PID:2313997 PID:600725 percent identity: 29.39; identified by sequence similarity; putative.
       0.610
HP_0906
Predicted coding region HP0906; Hypothetical protein; identified by GeneMark; putative.
       0.490
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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