Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HP_0940Amino acid ABC transporter, periplasmic binding protein (yckK); Similar to SP:P42199 PID:666981 GB:AL009126 percent identity: 41.53; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family. (256 aa)    
Predicted Functional Partners:
HP_0939
Amino acid ABC transporter, permease protein (yckJ); Similar to SP:P42200 PID:666982 PID:1805431 GB:AL009126 percent identity: 46.95; identified by sequence similarity; putative.
 0.999
HP_1171
Glutamine ABC transporter, ATP-binding protein (glnQ); Similar to PID:1183884 GB:AL009126 percent identity: 51.90; identified by sequence similarity; putative.
 
 
 0.758
HP_0809
Predicted coding region HP0809; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.682
alr
Alanine racemase, biosynthetic (alr); Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.606
HP_0938
Predicted coding region HP0938; Hypothetical protein; identified by GeneMark; putative.
       0.590
HP_0942
D-alanine glycine permease (dagA); Similar to GB:L42023 SP:P44917 PID:1005967 PID:1220986 PID:1205130 percent identity: 44.47; identified by sequence similarity; putative.
       0.580
HP_1169
Glutamine ABC transporter, permease protein (glnP); Similar to SP:P10345 PID:41572 GB:U00096 PID:1651370 PID:1787030 percent identity: 27.57; identified by sequence similarity; putative.
 
 
 0.550
HP_1170
Glutamine ABC transporter, permease protein (glnP); Similar to SP:P10345 PID:41572 GB:U00096 PID:1651370 PID:1787030 percent identity: 30.88; identified by sequence similarity; putative.
 
 
 0.525
dadA
D-amino acid dehydrogenase (dadA); Catalyzes the oxidative deamination of D-amino acids. Has broad substrate specificity; is mostly active on D-proline, and to a lesser extent, on several other D-amino acids such as D-alanine, D- phenylalanine and D-serine. Mediates electron transport from D-proline to coenzyme Q1 in vitro, and is involved in the electron transport chain from D-proline to the c-type cytochrome in vivo. Belongs to the DadA oxidoreductase family.
     
 0.517
HP_0986
Predicted coding region HP0986; Hypothetical protein; identified by GeneMark; putative.
      
 0.482
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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