STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase (dadA); Catalyzes the oxidative deamination of D-amino acids. Has broad substrate specificity; is mostly active on D-proline, and to a lesser extent, on several other D-amino acids such as D-alanine, D- phenylalanine and D-serine. Mediates electron transport from D-proline to coenzyme Q1 in vitro, and is involved in the electron transport chain from D-proline to the c-type cytochrome in vivo. Belongs to the DadA oxidoreductase family. (410 aa)    
Predicted Functional Partners:
alr
Alanine racemase, biosynthetic (alr); Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.964
HP_0672
Solute-binding signature and mitochondrial signature protein (aspB); Similar to PID:1146246 SP:P53001 GB:AL009126 percent identity: 47.42; identified by sequence similarity; putative.
   
 
 0.923
HP_0944
Conserved hypothetical protein; Similar to SP:P55654 PID:2182626 percent identity: 52.46; identified by sequence similarity; putative; Belongs to the RutC family.
  
    0.799
HP_0056
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.787
HP_0942
D-alanine glycine permease (dagA); Similar to GB:L42023 SP:P44917 PID:1005967 PID:1220986 PID:1205130 percent identity: 44.47; identified by sequence similarity; putative.
  
    0.743
icd
Isocitrate dehydrogenase (icd); Similar to GB:J02799 SP:P08200 PID:146432 GB:U00096 PID:1651560 percent identity: 70.73; identified by sequence similarity; putative; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 
 0.728
HP_1222
D-lactate dehydrogenase (dld); Similar to GB:L42023 PID:1006517 PID:1221287 PID:1205408 SP:Q57252 percent identity: 26.99; identified by sequence similarity; putative.
    
 0.706
HP_0036
Predicted coding region HP0036; Hypothetical protein; identified by GeneMark; putative.
   
 
  0.692
HP_1018
Predicted coding region HP1018; Hypothetical protein; identified by GeneMark; putative.
   
 
  0.692
HP_1019
Serine protease (htrA); Similar to PID:1109748 PID:881375 PID:2094772 percent identity: 52.86; identified by sequence similarity; putative; Belongs to the peptidase S1C family.
   
 
  0.692
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.