STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0958Predicted coding region HP0958; Hypothetical protein; identified by GeneMark; putative. (254 aa)    
Predicted Functional Partners:
HP_0959
Conserved hypothetical protein; Converts GTP to dihydroneopterin triphosphate. Is not active with GDP, GMP, ATP, CTP or UTP as substrate.
  
 0.977
HP_0957
3-deoxy-d-manno-octulosonic-acid transferase (kdtA); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
    0.837
glyQ
glycyl-tRNA synthetase, alpha subunit (glyQ); Similar to GB:L42023 SP:P43821 PID:1006055 PID:1221033 PID:1205174 percent identity: 59.25; identified by sequence similarity; putative.
       0.836
lgt
Prolipoprotein diacylglyceryl transferase (lgt); Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.829
HP_0956
Conserved hypothetical protein; Similar to SP:Q10786 PID:1403502 GB:AL123456 percent identity: 36.19; identified by sequence similarity; putative.
       0.829
gpsA
Glycerol-3-phosphate dehydrogenase, NAD(P)+ dependent; Similar to SP:P46919 PID:974332 PID:1146220 GB:AL009126 percent identity: 36.22; identified by sequence similarity; putative; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.821
rdxA
Oxygen-insensitive NAD(P)H nitroreductase; Reduction of a variety of nitroaromatic compounds using NADPH as source of reducing equivalents; two electrons are transferred (By similarity). Capable of reducing metronidazole; inactive RdxA renders the bacterium resistant to this compound. The reduction of metronidazole generates hydroxylamine, a potent mutagen and bactericide.
  
    0.771
HP_1462
Secreted protein involved in flagellar motility; Similar to GP:1419557 percent identity: 96.15; identified by sequence similarity; putative.
    
   0.769
rpoN
RNA polymerase sigma-54 factor (rpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 
 0.734
cheAY
Histidine kinase (cheA); Member of the two-component regulatory system CheAY/CheY that regulates chemotaxis and colonization of the gastric mucosa. Functions as a sensor protein kinase which is autophosphorylated at a histidine residue and transfers its phosphate group to the conserved aspartic acid residue in the regulatory domain of CheY. In turn, phosphorylated CheY (CheY-P) interacts with the flagellar motor protein FliM to cause clockwise flagellar rotation and bacterial reversals, as opposed to straight swimming when CheY is not phosphorylated (By similarity).
   
 
 0.599
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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