Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
HP_0963Predicted coding region HP0963; Hypothetical protein; identified by GeneMark; putative. (447 aa)    
Predicted Functional Partners:
HP_0965
Predicted coding region HP0965; Hypothetical protein; identified by GeneMark; putative.
 
     0.948
HP_0966
Conserved hypothetical protein; Similar to GB:L18965 SP:P40983 percent identity: 29.07; identified by sequence similarity; putative.
 
    
0.850
acpP-2
Acyl carrier protein (acpP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.812
HP_0964
Predicted coding region HP0964; Hypothetical protein; identified by GeneMark; putative.
       0.781
rsmA
16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
    
 
 0.721
HP_0090
Malonyl coenzyme A-acyl carrier protein transacylase (fabD); Similar to GB:L42023 SP:P43712 PID:1003213 PID:1222070 PID:1204413 percent identity: 35.39; identified by sequence similarity; putative.
  
   0.679
rpsG
Ribosomal protein S7 (rps7); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
 0.677
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.658
rpsP
Ribosomal protein S16 (rpS16); Similar to GB:L42023 SP:P44382 PID:1003307 PID:1222122 PID:1204461 percent identity: 46.75; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bS16 family.
    
 0.642
rpsF
Ribosomal protein S6 (rps6); Binds together with S18 to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS6 family.
   
  0.636
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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