STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_0968Predicted coding region HP0968; Hypothetical protein; identified by GeneMark; putative. (21 aa)    
Predicted Functional Partners:
HP_0969
Cation efflux system protein (czcA); Similar to GB:M26073 SP:P13511 PID:141928 percent identity: 37.32; identified by sequence similarity; putative; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.796
HP_0967
Virulence associated protein D (vapD); Cleaves ssRNA, mostly between U:A.
     
 0.782
HP_0970
Nickel-cobalt-cadmium resistance protein (nccB); Similar to PID:773675 percent identity: 21.13; identified by sequence similarity; putative.
       0.741
HP_0971
Predicted coding region HP0971; Hypothetical protein; identified by GeneMark; putative.
       0.741
glyS
glycyl-tRNA synthetase, beta subunit (glyS); Similar to GB:L42023 SP:P43822 PID:1006049 PID:1221030 PID:1205171 percent identity: 33.58; identified by sequence similarity; putative.
       0.596
vapD
Virulence associated protein D (vapD); Cleaves ssRNA, mostly between U:A; cleavage is not dependent on mono- or divalent cations. Can cleave RNAs as short as 6 nucleotides.
      
 0.457
HP_0973
Predicted coding region HP0973; Hypothetical protein; identified by GeneMark; putative.
       0.428
gpmI
Phosphoglycerate mutase (pgm); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.415
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.