STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_1127Predicted coding region HP1127; Hypothetical protein; identified by GeneMark; putative. (193 aa)    
Predicted Functional Partners:
HP_1128
Predicted coding region HP1128; Hypothetical protein; identified by GeneMark; putative.
    
 0.979
HP_1129
Biopolymer transport protein (exbD); Similar to GB:M28819 SP:P18784 PID:145869 PID:882534 GB:U00096 percent identity: 29.66; identified by sequence similarity; putative.
  
 
 0.935
tolB
Colicin tolerance-like protein (tolB); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.908
HP_1130
Biopolymer transport protein (exbB); Similar to GB:M28819 SP:P18783 PID:145868 PID:882535 GB:U00096 percent identity: 32.94; identified by sequence similarity; putative.
  
 
 0.890
HP_1125
Peptidoglycan associated lipoprotein precursor (omp18); Similar to PID:1063274 percent identity: 42.59; identified by sequence similarity; putative.
   
 
 0.821
HP_0876
Iron-regulated outer membrane protein (frpB); Similar to PID:1052770 percent identity: 27.60; identified by sequence similarity; putative.
   
   0.698
HP_0915
Iron-regulated outer membrane protein (frpB); Similar to PID:1052770 percent identity: 26.68; identified by sequence similarity; putative.
   
   0.698
HP_0916
Iron-regulated outer membrane protein (frpB); Similar to PID:1052770 percent identity: 28.80; identified by sequence similarity; putative.
   
   0.698
slyD
Peptidyl-prolyl cis-trans isomerase, FKBP-type rotamase (slyD); Folding helper with both chaperone and peptidyl-prolyl cis- trans isomerase (PPIase) activities. Chaperone activity prevents aggregation of unfolded or partially folded proteins and promotes their correct folding. PPIases catalyze the cis-trans isomerization of Xaa- Pro bonds of peptides, which accelerates slow steps of protein folding and thus shortens the lifetime of intermediates. Both strategies lower the concentration of intermediates and increase the productivity and yield of the folding reaction (By similarity); Bel [...]
       0.665
HP_1124
Predicted coding region HP1124; Hypothetical protein; identified by GeneMark; putative.
       0.665
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.