STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_1396Predicted coding region HP1396; Hypothetical protein; identified by GeneMark; putative. (288 aa)    
Predicted Functional Partners:
HP_1397
Predicted coding region HP1397; Hypothetical protein; identified by GeneMark; putative.
     0.972
HP_0629
Predicted coding region HP0629; Hypothetical protein; identified by GeneMark; putative.
  
     0.763
HP_0513
Predicted coding region HP0513; Hypothetical protein; identified by GeneMark; putative.
  
    0.755
HP_1398
Alanine dehydrogenase (ald); Similar to GB:L20916 SP:Q08352 PID:299163 PID:1665852 GB:AL009126 percent identity: 39.55; identified by sequence similarity; putative.
       0.510
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.