STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_1423Conserved hypothetical protein; Similar to GB:D26185 SP:P37557 PID:467448 GB:AL009126 percent identity: 40.28; identified by sequence similarity; putative. (84 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28 (rpL28); Similar to GB:L43967 SP:P47665 PID:1046142 percent identity: 41.67; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.943
rplQ
Ribosomal protein L17 (rpl17); Similar to GB:L42023 SP:P44355 PID:1005810 PID:1220898 PID:1205052 percent identity: 48.28; identified by sequence similarity; putative.
   
 
 0.943
rpmH
Ribosomal protein L34 (rpl34); Similar to GB:U10529 SP:P45647 PID:511456 percent identity: 70.45; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL34 family.
  
   0.941
rplM
Ribosomal protein L13 (rpl13); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
   0.939
rplN
Ribosomal protein L14 (rpl14); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
    
   0.939
rplV
Ribosomal protein L22 (rpl22); This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
    
   0.939
rpmI
Ribosomal protein L35 (rpl35); Similar to PID:1171433 SP:P52830 percent identity: 50.82; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL35 family.
    
   0.938
rplT
Ribosomal protein L20 (rpl20); Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).
   
   0.938
rpmF
Ribosomal protein L32 (rpl32); Similar to SP:P07840 percent identity: 41.67; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.938
rplU
Ribosomal protein L21 (rpl21); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.938
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.