STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HP_1471Type IIS restriction enzyme R protein (BCGIB); Contingency gene; similar to GB:L17341 SP:Q07606 PID:304141 percent identity: 29.18; identified by sequence similarity; putative. (397 aa)    
Predicted Functional Partners:
HP_1472
Type IIS restriction enzyme M protein (mod); Similar to GB:L17341 SP:Q07605 PID:304140 percent identity: 32.45; identified by sequence similarity; putative.
 
  
 0.966
HP_0464
Type I restriction enzyme R protein (hsdR); Contingency gene; similar to GB:L77117 SP:Q58611 PID:1591843 percent identity: 31.67; identified by sequence similarity; putative.
   
 
 0.818
HP_0848
Type I restriction enzyme S protein (hsdS); Similar to GB:L42023 PID:1003331 PID:1222133 PID:1204473 PID:1573175 percent identity: 36.99; identified by sequence similarity; putative.
   
 
 0.669
HP_0849
Predicted coding region HP0849; Hypothetical protein; identified by GeneMark; putative.
   
 
 0.669
HP_0846
Type I restriction enzyme R protein (hsdR); Subunit R is required for both nuclease and ATPase activities, but not for modification.
   
   0.644
HP_1402
Type I restriction enzyme R protein (hsdR); Subunit R is required for both nuclease and ATPase activities, but not for modification.
   
   0.644
HP_0462
Type I restriction enzyme S protein (hsdS); Similar to GB:L77117 percent identity: 32.49; identified by sequence similarity; putative.
   
   0.610
HP_0790
Anti-codon nuclease masking agent (prrB); Similar to SP:P17222 GB:X52284 PID:42512 percent identity: 42.90; identified by sequence similarity; putative.
   
   0.610
HP_1383
Restriction modification system S subunit; Similar to GB:L77117 percent identity: 37.62; identified by sequence similarity; putative.
   
   0.610
polA
DNA polymerase I (polA); In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity.
       0.604
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.