STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selASelenocysteine synthase SelA, putative; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (386 aa)    
Predicted Functional Partners:
serS
seryl-tRNA synthetase (serS); Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.975
HP_0801
Molybdopterin converting factor, subunit 1 (moaD); Similar to SP:P30748 PID:42011 GB:U00096 PID:1651357 PID:1787002 percent identity: 36.67; identified by sequence similarity; putative.
    
   0.769
HP_0490
Putative potassium channel protein, putative; Similar to GB:L77117 SP:Q57604 PID:1498918 percent identity: 25.75; identified by sequence similarity; putative.
   
    0.615
HP_0031
Predicted coding region HP0031; Hypothetical protein; identified by GeneMark; putative; Belongs to the universal stress protein A family.
  
   0.608
HP_1512
Iron-regulated outer membrane protein (frpB); Similar to PID:1052770 percent identity: 26.59; identified by sequence similarity; putative.
  
  
 0.553
nusA
Transcription termination factor NusA (nusA); Participates in both transcription termination and antitermination.
  
    0.532
HP_0634
Quinone-reactive Ni/Fe hydrogenase (hydD); Similar to SP:P31876 PID:581830 percent identity: 54.72; identified by sequence similarity; putative.
  
 
 
 0.521
HP_0047
Hydrogenase expression/formation protein (hypE); Similar to SP:P26412 percent identity: 39.70; identified by sequence similarity; putative.
     
 0.435
Your Current Organism:
Helicobacter pylori
NCBI taxonomy Id: 85962
Other names: H. pylori 26695, Helicobacter pylori (strain 26695), Helicobacter pylori 26695, Helicobacter pylori ATCC 700392, Helicobacter pylori KE26695, Helicobacter pylori str. 26695, Helicobacter pylori strain 26695
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.