STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFS47604.1PFAM: ABC transporter. (311 aa)    
Predicted Functional Partners:
AFS47603.1
PFAM: ABC-2 type transporter.
  
 0.973
AFS47602.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
       0.773
AFS47606.1
Alcohol dehydrogenase, iron-dependent; PFAM: Iron-containing alcohol dehydrogenase.
  
    0.620
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.619
AFS47605.1
PFAM: Glutamine amidotransferase class-I.
       0.618
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.603
atpC
ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.587
AFS47578.1
PFAM: Tetratricopeptide repeat.
  
 
 0.561
AFS47856.1
PFAM: ABC transporter.
  
0.555
AFS46880.1
ABC transporter, permease protein,ABC transporter; PFAM: ABC transporter transmembrane region; ABC transporter.
 
 
0.515
Your Current Organism:
alpha proteobacterium HIMB5
NCBI taxonomy Id: 859653
Other names: a. proteobacterium HIMB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.