STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argIOrnithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. (341 aa)    
Predicted Functional Partners:
carB
Carbamoyl-phosphate synthase large chain.
 
 
 0.958
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
  
 
 0.882
speB
Agmatinase; Belongs to the arginase family.
    
 0.745
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.659
thrA
Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
 0.653
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.649
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.642
hisI
Histidine biosynthesis bifunctional protein hisIE; In the N-terminal section; belongs to the PRA-CH family.
  
  
 0.552
yjgF
Putative endoribonuclease L-PSP.
       0.540
trpG
Glutamine amidotransferase.
      
 0.482
Your Current Organism:
Blochmannia vafer
NCBI taxonomy Id: 859654
Other names: C. Blochmannia vafer str. BVAF, Candidatus Blochmannia vafer BVAF, Candidatus Blochmannia vafer str. BVAF, Candidatus Blochmannia vafer strain BVAF
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