Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CQY22_007365 | rplD | GCA_900073015_00012 | GCA_900073015_01581 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.994 |
CQY22_007365 | rpsB | GCA_900073015_00012 | GCA_900073015_00390 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
CQY22_007365 | rpsC | GCA_900073015_00012 | GCA_900073015_01576 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.994 |
CQY22_007365 | rpsD | GCA_900073015_00012 | GCA_900073015_01523 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.994 |
CQY22_007365 | rpsE | GCA_900073015_00012 | GCA_900073015_01549 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
CQY22_007365 | rpsH | GCA_900073015_00012 | GCA_900073015_01552 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.994 |
CQY22_007365 | rpsJ | GCA_900073015_00012 | GCA_900073015_01583 | Unannotated protein. | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.994 |
CQY22_007365 | rpsK | GCA_900073015_00012 | GCA_900073015_01524 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
CQY22_007365 | rpsQ | GCA_900073015_00012 | GCA_900073015_01573 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
CQY22_007365 | rpsS | GCA_900073015_00012 | GCA_900073015_01578 | Unannotated protein. | Unannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.994 |
rplD | CQY22_007365 | GCA_900073015_01581 | GCA_900073015_00012 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein. | 0.994 |
rplD | rpsB | GCA_900073015_01581 | GCA_900073015_00390 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplD | rpsC | GCA_900073015_01581 | GCA_900073015_01576 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsD | GCA_900073015_01581 | GCA_900073015_01523 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplD | rpsE | GCA_900073015_01581 | GCA_900073015_01549 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsH | GCA_900073015_01581 | GCA_900073015_01552 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplD | rpsJ | GCA_900073015_01581 | GCA_900073015_01583 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplD | rpsK | GCA_900073015_01581 | GCA_900073015_01524 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplD | rpsQ | GCA_900073015_01581 | GCA_900073015_01573 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rplD | rpsS | GCA_900073015_01581 | GCA_900073015_01578 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
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