Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CQY22_010715 | rplD | GCA_900073015_00266 | GCA_900073015_01581 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.837 |
CQY22_010715 | rplM | GCA_900073015_00266 | GCA_900073015_01502 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.831 |
CQY22_010715 | rplO | GCA_900073015_00266 | GCA_900073015_01547 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.853 |
CQY22_010715 | rplU | GCA_900073015_00266 | GCA_900073015_03745 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.833 |
CQY22_010715 | rplW | GCA_900073015_00266 | GCA_900073015_01580 | Unannotated protein. | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.844 |
CQY22_010715 | rpsC | GCA_900073015_00266 | GCA_900073015_01576 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.833 |
CQY22_010715 | rpsE | GCA_900073015_00266 | GCA_900073015_01549 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.848 |
CQY22_010715 | rpsI | GCA_900073015_00266 | GCA_900073015_01501 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.848 |
CQY22_010715 | rpsO | GCA_900073015_00266 | GCA_900073015_00329 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.833 |
CQY22_010715 | rpsP | GCA_900073015_00266 | GCA_900073015_00414 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.842 |
rplD | CQY22_010715 | GCA_900073015_01581 | GCA_900073015_00266 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein. | 0.837 |
rplD | rplM | GCA_900073015_01581 | GCA_900073015_01502 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplD | rplO | GCA_900073015_01581 | GCA_900073015_01547 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplD | rplU | GCA_900073015_01581 | GCA_900073015_03745 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplD | rplW | GCA_900073015_01581 | GCA_900073015_01580 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplD | rpsC | GCA_900073015_01581 | GCA_900073015_01576 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsE | GCA_900073015_01581 | GCA_900073015_01549 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsI | GCA_900073015_01581 | GCA_900073015_01501 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplD | rpsO | GCA_900073015_01581 | GCA_900073015_00329 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplD | rpsP | GCA_900073015_01581 | GCA_900073015_00414 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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