Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CQY22_003595 | CQY22_007575 | GCA_900073015_02454 | GCA_900073015_02934 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.603 |
CQY22_003595 | CQY22_012760 | GCA_900073015_02454 | GCA_900073015_00751 | Unannotated protein. | Unannotated protein. | 0.603 |
CQY22_003595 | CQY22_017135 | GCA_900073015_02454 | GCA_900073015_00810 | Unannotated protein. | Unannotated protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.590 |
CQY22_003595 | deaD | GCA_900073015_02454 | GCA_900073015_01009 | Unannotated protein. | Unannotated protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.603 |
CQY22_003595 | pnp | GCA_900073015_02454 | GCA_900073015_00328 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.955 |
CQY22_003595 | rph | GCA_900073015_02454 | GCA_900073015_00515 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.555 |
CQY22_007575 | CQY22_003595 | GCA_900073015_02934 | GCA_900073015_02454 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein. | 0.603 |
CQY22_007575 | CQY22_015860 | GCA_900073015_02934 | GCA_900073015_03746 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein. | 0.902 |
CQY22_007575 | pnp | GCA_900073015_02934 | GCA_900073015_00328 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.957 |
CQY22_007575 | rph | GCA_900073015_02934 | GCA_900073015_00515 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.841 |
CQY22_007575 | rpsO | GCA_900073015_02934 | GCA_900073015_00329 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.682 |
CQY22_012760 | CQY22_003595 | GCA_900073015_00751 | GCA_900073015_02454 | Unannotated protein. | Unannotated protein. | 0.603 |
CQY22_012760 | CQY22_015860 | GCA_900073015_00751 | GCA_900073015_03746 | Unannotated protein. | Unannotated protein. | 0.688 |
CQY22_012760 | pnp | GCA_900073015_00751 | GCA_900073015_00328 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.897 |
CQY22_012760 | rph | GCA_900073015_00751 | GCA_900073015_00515 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.762 |
CQY22_012760 | rpsO | GCA_900073015_00751 | GCA_900073015_00329 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.682 |
CQY22_015860 | CQY22_007575 | GCA_900073015_03746 | GCA_900073015_02934 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.902 |
CQY22_015860 | CQY22_012760 | GCA_900073015_03746 | GCA_900073015_00751 | Unannotated protein. | Unannotated protein. | 0.688 |
CQY22_015860 | CQY22_017135 | GCA_900073015_03746 | GCA_900073015_00810 | Unannotated protein. | Unannotated protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.676 |
CQY22_015860 | deaD | GCA_900073015_03746 | GCA_900073015_01009 | Unannotated protein. | Unannotated protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.737 |
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