STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22228.1Stage 0 sporulation protein yaaT; RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (PTHR21600); PSP1, C-terminal (PF04468); PSP1, C-terminal (PS51411); RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (PTHR21600:SF3). (357 aa)    
Predicted Functional Partners:
AEK22229.1
Gliding motility lipoprotein gldH homolog; N-terminus: SpII(LipoP); Flags: Precursor; 1 transmembrane domain; Gliding motility-associated lipoprotein, GldH (TIGR03511).
       0.846
AEK22230.1
DD-transpeptidase; N-terminus: TMH(LipoP); Short=PBP-1a;Short=PBP1a;Includes:RecName: Full=Penicillin-insensitive transglycosylase;AltName: Full=Peptidoglycan TGase;Includes:RecName: Full=Penicillin-sensitive transpeptidase;AltName: Full=DD-transpeptidase; 1 transmembrane domain; Penicillin-binding protein, transpeptidase (PF00905); Glycosyl transferase, family 51 (PF00912); Beta-lactamase-type transpeptidase fold (SSF56601); Undefined Gene3D domain (G3DSA:3.40.710.10); Protein involved in catalytic activity, penicillin binding, peptidoglycan biosynthetic process and peptidoglycan-base [...]
       0.845
rny
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.729
AEK22227.1
Hypothetical protein; N-terminus: SpI(SignalPHMM); 1 transmembrane domain.
       0.567
AEK22657.1
DAHP synthase; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase;AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase;AltName: Full=DAHP synthase; Chorismate mutase (PS51168); Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 (PTHR21057:SF1); Chorismate mutase, type II (SSF48600); Aldolase-type TIM barrel (G3DSA:3.20.20.70); Aldolase (SSF51569); DAHP synthetase I/KDSA (PF00793); Chorismate mutase, type II (PF01817); PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE (PTHR21057); Protein involved in aldehyde-lyase activity, catalytic activity, aromatic amino acid family [...]
  
     0.400
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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