STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22429.1Conserved hypothetical protein; N-terminus: SpI(SignalPHMM); 1 transmembrane domain; gb def: ComEA protein-related protein (PTHR21180:SF4); Helix-hairpin-helix DNA-binding motif, class 1 (SM00278); FAMILY NOT NAMED (PTHR21180); Protein involved in DNA binding and DNA repair. (289 aa)    
Predicted Functional Partners:
AEK22430.1
ACYL-COA DEHYDROGENASE (PTHR10909:SF10); Acyl-CoA oxidase/dehydrogenase, central domain (PF02770); ELECTRON TRANSPORT OXIDOREDUCTASE (PTHR10909); Acyl-CoA dehydrogenase/oxidase, N-terminal (G3DSA:1.10.540.10); Acyl-CoA dehydrogenase, conserved site (PS00073); Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (G3DSA:1.20.140.10); Acyl-CoA dehydrogenase/oxidase (SSF56645); Acyl-CoA oxidase/dehydrogenase, central domain (G3DSA:2.40.110.10); Acyl-CoA oxidase/dehydrogenase, type 1 (PF00441); Acyl-CoA dehydrogenase, N-terminal (PF02771); Acyl-CoA dehydrogenase/oxidase C-terminal (SSF47203) [...]
       0.683
AEK23250.1
ComE operon protein 3; N-terminus: TMH(LipoP); 12 transmembrane domains; ComEC/Rec2-related protein (PF03772); ComEC/Rec2-related protein (TIGR00360).
 
  
 0.676
AEK22431.1
Putative methyltransferase; Undefined Gene3D domain (G3DSA:3.40.50.150); Methyltransferase type 11 (PF08241); S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); Protein involved in methyltransferase activity and metabolic process.
       0.611
AEK22432.1
Hypothetical protein; N-terminus: TMH(LipoP); 2 transmembrane domains.
       0.611
AEK22268.1
Protein smf; RuvA domain 2-like (SSF47781); DNA recombination-mediator protein A (PF02481); DNA recombination-mediator protein A (TIGR00732); Putative lysine decarboxylase (SSF102405); Protein involved in DNA mediated transformation.
 
  
 0.610
AEK23133.1
Conserved hypothetical protein; N-terminus: SpII(LipoP).
  
     0.593
AEK23954.1
Protein COM101A; N-terminus: SpII(ProfileScan); AltName: Full=DNA transformation protein comF;AltName: Full=Protein COM101A; PRTase-like (SSF53271); Phosphoribosyltransferase (PF00156); Protein involved in nucleoside metabolic process.
 
  
 0.579
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.567
AEK22416.1
Hypothetical protein; Weak similarity to UniProt:Q87KN9; N-terminus: SpI(LipoP); TonB-dependent receptor, beta-barrel (G3DSA:2.40.170.20); Porins (SSF56935); Protein involved in receptor activity, transporter activity and transport.
  
     0.524
AEK23784.1
Protein of unknown function DUF2851 (PF11013).
 
     0.502
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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