STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22458.1Regulatory protein pchR; Helix-turn-helix, AraC type (PF00165); Helix-turn-helix, AraC domain (PS01124); ARAC FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN (PTHR11019:SF11); Helix-turn-helix, AraC domain (SM00342); Helix-turn-helix, AraC type, subdomain 2 (PS00041); Homeodomain-like (SSF46689); THIJ/PFPI (PTHR11019); Helix-turn-helix, AraC (PR00032); Protein involved in transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent. (296 aa)    
Predicted Functional Partners:
AEK24158.1
Hypothetical protein; Weak similarity to UniProt:P28809; Homeodomain-related (G3DSA:1.10.10.60); ARAC FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN (PTHR11019:SF11); Homeodomain-like (SSF46689); Helix-turn-helix, AraC type (PF00165); Helix-turn-helix, AraC domain (PS01124); Helix-turn-helix, AraC domain (SM00342); Helix-turn-helix, AraC type, subdomain 2 (PS00041); THIJ/PFPI (PTHR11019); Helix-turn-helix, AraC (PR00032); Protein involved in DNA binding, transcription factor activity, sequence-specific DNA binding, regulation of transcription and regulation of transcription, DNA-dependent.
  
     0.590
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.572
AEK23225.1
Peptidyl-prolyl cis-trans isomerase; N-terminus: SpII(LipoP); 1 transmembrane domain; Peptidyl-prolyl cis-trans isomerase, FKBP-type (PS50059); Gliding motility-associated, peptidyl-prolyl isomerase, GldI (TIGR03516); Peptidyl-prolyl cis-trans isomerase, FKBP-type (PTHR10516); Undefined Gene3D domain (G3DSA:3.10.50.40); Peptidyl-prolyl cis-trans isomerase, FKBP-type (PF00254); FKBP-like (SSF54534); Protein involved in protein folding.
  
     0.560
AEK22456.1
Pre-uroporphyrinogen synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.550
AEK22459.1
Hypothetical protein; Weak similarity to UniProt:P76578; N-terminus: SpII(LipoP); Undefined Gene3D domain (G3DSA:1.50.10.20); A2M (PF00207); Alpha-2-macroglobulin, thiol-ester bond-forming (PF10569); Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (SSF48239); Alpha-2-macroglobulin, N-terminal (PF01835); Alpha-2-macroglobulin MG1 domain (PF11974); Alpha-2-macroglobulin, N-terminal 2 (PF07703); Protein involved in endopeptidase inhibitor activity.
       0.523
rpoA
RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.517
AEK23262.1
Secreted protein; N-terminus: SpI(LipoP).
  
     0.483
AEK24212.1
S-adenosyl-methyltransferase MraW.
  
     0.466
AEK23479.1
Secreted protein; N-terminus: SpI(LipoP); Flags: Precursor.
  
     0.457
AEK22889.1
Conserved hypothetical protein; N-terminus: SpI(LipoP).
  
     0.449
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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