STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22474.1ABC transporter permease; N-terminus: TMH(LipoP); 9 transmembrane domains. (300 aa)    
Predicted Functional Partners:
AEK22473.1
Bacitracin transport ATP-binding protein bcrA; P-loop containing nucleoside triphosphate hydrolases (SSF52540); Undefined Gene3D domain (G3DSA:3.40.50.300); ATPase, AAA+ type, core (SM00382); ABC transporter-like (PF00005); ATP BINDING CASSETE (ABC) TRANSPORTER (PTHR19222); ABC transporter-like (PS50893); Protein involved in ATP binding, ATPase activity, nucleotide binding and nucleoside-triphosphatase activity.
       0.773
AEK22475.1
AltName: Full=cAMP receptor protein;AltName: Full=cAMP regulatory protein; Cyclic nucleotide-binding (SM00100); Cyclic nucleotide-binding (PS50042); Cyclic nucleotide-binding-like (SSF51206); Cyclic nucleotide-binding (PF00027); RmlC-like jelly roll fold (G3DSA:2.60.120.10); Winged helix DNA-binding domain (SSF46785); Winged helix-turn-helix transcription repressor DNA-binding (G3DSA:1.10.10.10); Helix-turn-helix motif, Crp-type (PS51063); Protein involved in DNA binding and regulation of transcription.
       0.648
AEK22471.1
Conserved hypothetical protein; 1 transmembrane domain.
       0.538
AEK22472.1
AltName: Full=Sigma-W factor; Undefined Gene3D domain (G3DSA:1.10.1740.10); RNA polymerase sigma factor, region 2 (SSF88946); RNA polymerase sigma factor 70, region 4 type 2 (PF08281); RNA polymerase sigma factor, region 3/4 (SSF88659); RNA polymerase sigma-70 (TIGR02937); RNA polymerase sigma-70 region 2 (PF04542); Protein involved in DNA binding, transcription factor activity, sigma factor activity, transcription initiation and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
       0.538
AEK22476.1
Aspartate ammonia-lyase; Short=Aspartase; L-Aspartase-like (SSF48557); Fumarate lyase, conserved site (PS00163); Fumarate lyase (PR00149); Undefined Gene3D domain (G3DSA:1.20.200.10); Undefined Gene3D domain (G3DSA:1.10.40.30); ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE (PTHR11444); ASPARTATE AMMONIA LYASE (PTHR11444:SF1); Fumarate lyase (PF00206); Aspartate ammonia-lyase (TIGR00839); Delta crystallin (PR00145); Undefined Gene3D domain (G3DSA:1.10.275.10); Fumarase C, C-terminal (PF10415); FUMC_MF_00743 (MF_00743); Protein involved in catalytic activity, aspartate ammoni [...]
       0.445
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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