STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22778.1Conserved hypothetical protein; N-terminus: SpII(LipoP); 1 transmembrane domain. (227 aa)    
Predicted Functional Partners:
AEK22254.1
Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.606
ybeY
Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.572
rpsQ
30S ribosomal protein S17 1; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.560
rplQ
Ribosomal protein L17 (MF_01368); Ribosomal protein L17 (G3DSA:3.90.1030.10); RIBOSOMAL PROTEIN L17 (PTHR14413:SF3); Ribosomal protein L17 (PF01196); Ribosomal protein L17 (PS01167); Ribosomal protein L17 (TIGR00059); Ribosomal protein L17 (PTHR14413); Ribosomal protein L17 (SSF64263); Protein involved in structural constituent of ribosome and translation.
  
   0.526
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.520
AEK23448.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBER (PTHR11968); Acetyl-CoA synthetase-like (SSF56801); Beta tubulin, autoregulation binding site (PS00228); Undefined Gene3D domain (G3DSA:3.30.300.30); AMP-dependent synthetase/ligase (PF00501); Undefined Gene3D domain (G3DSA:3.40.50.980); O-SUCCINYLBENZOIC ACID--COA LIGASE (PTHR11968:SF14); Protein involved in catalytic activity and metabolic process.
   
   0.511
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.503
AEK22780.1
AltName: Full=Sigma-W factor; Undefined Gene3D domain (G3DSA:1.10.1740.10); RNA polymerase sigma factor 70, region 4 type 2 (PF08281); RNA polymerase sigma factor, region 3/4 (SSF88659); RNA polymerase sigma factor, region 2 (SSF88946); RNA polymerase sigma-70 (TIGR02937); RNA polymerase sigma-70 region 2 (PF04542); Protein involved in DNA binding, transcription factor activity, sigma factor activity, transcription initiation and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.489
AEK22781.1
Conserved hypothetical protein; N-terminus: SpI(SignalPHMM); 1 transmembrane domain.
  
    0.489
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.487
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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