STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22850.1Protein of unknown function DUF28 (PTHR12532); Protein of unknown function DUF28 (MF_00693); Integrase, N-terminal zinc-binding domain-like (G3DSA:1.10.10.200); Protein of unknown function DUF28 (PF01709); Undefined Gene3D domain (G3DSA:3.30.1270.10); Protein of unknown function DUF28 (TIGR01033); Protein of unknown function DUF28 (SSF75625). (239 aa)    
Predicted Functional Partners:
AEK22848.1
CDP-DAG synthase; N-terminus: TMH(LipoP); AltName: Full=CDP-diglyceride pyrophosphorylase;AltName: Full=CDP-diglyceride synthase;AltName: Full=CDP-diacylglycerol synthase;Short=CDS;AltName: Full=CTP:phosphatidate cytidylyltransferase;AltName: Full=CDP-DG synthase;AltName: Full=CDP-DAG synthase; 8 transmembrane domains; Phosphatidate cytidylyltransferase (PF01148); PHOSPHATIDATE CYTIDYLYLTRANSFERASE (PTHR13773); Phosphatidate cytidylyltransferase (PS01315); Protein involved in transferase activity, transferring phosphorus-containing groups; Belongs to the CDS family.
       0.613
AEK22849.1
N-terminus: TMH(LipoP); Contains:RecName: Full=Phosphatidylserine decarboxylase alpha chain;Contains:RecName: Full=Phosphatidylserine decarboxylase beta chain; 2 transmembrane domains; Phosphatidylserine decarboxylase-related protein (TIGR00164); Phosphatidylserine decarboxylase-related (PF02666); Protein involved in phosphatidylserine decarboxylase activity, cofactor binding, phosphatidylethanolamine biosynthetic process and phospholipid biosynthetic process.
       0.605
AEK22847.1
Conserved hypothetical protein; Lactate utilization protein B/C (PF02589).
       0.578
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.535
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.533
AEK22870.1
Peptidyl-prolyl cis-trans isomerase, trigger factor; Undefined Gene3D domain (G3DSA:1.10.3120.10); Trigger factor (PIRSF003095); Trigger factor, C-terminal, bacterial (PF05698); Trigger factor, ribosome-binding, bacterial (SSF102735); Trigger factor, C-terminal, bacterial (SSF109998); Trigger factor (TIGR00115); Trigger factor, ribosome-binding, bacterial (G3DSA:3.30.70.1050); Trigger factor, ribosome-binding, bacterial (PF05697); Protein involved in protein folding and protein transport.
 
    0.529
pheT
AltName: Full=Phenylalanine--tRNA ligase beta chain;Short=PheRS; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (G3DSA:3.30.70.380); tRNA synthetase, B5 (PF03484); Nucleic acid-binding, OB-fold (G3DSA:2.40.50.140); tRNA synthetase, B5 (G3DSA:3.30.56.20); Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (SSF54991); B3/B4 tRNA-binding domain (PF03483); Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial (TIGR00472); Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (PF03147); PHENYLALANYL [...]
 
   0.501
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
    0.495
aspS
Aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
  
 0.474
rpmF
Ribosomal protein L32p (PF01783); Ribosomal protein L32p (MF_00340); Ribosomal protein L32p (TIGR01031); Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL32 family.
   
  
 0.466
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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