STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK22911.1Sigma-30; AltName: Full=Sigma-30; Undefined Gene3D domain (G3DSA:1.10.1740.10); RNA polymerase sigma factor 70, region 4 type 2 (PF08281); RNA polymerase sigma factor, region 3/4 (SSF88659); RNA polymerase sigma factor, region 2 (SSF88946); RNA polymerase sigma-70 (TIGR02937); RNA polymerase sigma-70 region 2 (PF04542); Protein involved in DNA binding, transcription factor activity, sigma factor activity, transcription initiation and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)    
Predicted Functional Partners:
AEK22910.1
Lipid A export ATP-binding/permease protein msbA; N-terminus: SpI(LipoP); 5 transmembrane domains; Undefined Gene3D domain (G3DSA:3.40.50.300); P-loop containing nucleoside triphosphate hydrolases (SSF52540); ABC transporter, transmembrane domain (PF00664); ABC transporter-like (PS50893); ABC transporter integral membrane type 1 (PS50929); ATPase, AAA+ type, core (SM00382); ABC transporter-like (PF00005); ABC transporter, transmembrane domain, type 1 (SSF90123); ABC transporter, conserved site (PS00211); LIPID A EXPORT ATP-BINDING/PERMEASE PROTEIN MSBA (PTHR19242:SF91); ATP-BINDING CAS [...]
  
    0.804
AEK22913.1
Conserved hypothetical protein; N-terminus: SpI(LipoP); 1 transmembrane domain.
  
    0.778
AEK22912.1
Conserved hypothetical protein; 1 transmembrane domain.
       0.677
AEK22709.1
Undefined Gene3D domain (G3DSA:1.10.1740.10); RNA polymerase sigma factor 70, region 4 type 2 (PF08281); RNA polymerase sigma factor, region 3/4 (SSF88659); RNA polymerase sigma factor, region 2 (SSF88946); RNA polymerase sigma-70 (TIGR02937); RNA polymerase sigma-70 region 2 (PF04542); Protein involved in DNA binding, transcription factor activity, sigma factor activity, transcription initiation and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.648
AEK22909.1
Glucose phosphomutase; Short=PGM;AltName: Full=Alpha-phosphoglucomutase;AltName: Full=Glucose phosphomutase; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (PF02880); Alpha-D-phosphohexomutase, N-terminal (PR00509); Alpha-D-phosphohexomutase, C-terminal (PF00408); Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (G3DSA:3.40.120.10); Phosphoglucomutase, C-terminal domain (SSF55957); Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (PF02878); PHOSPHOGLUCOMUTASE (PTHR22573:SF2); Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (SSF53738); Alpha-D-phosphohexomutase, alp [...]
     
 0.621
AEK22878.1
Conserved hypothetical protein; N-terminus: SpII(LipoP); Flags: Precursor; 1 transmembrane domain.
  
 
 0.512
rpoA
RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.484
rpoC
RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.479
rpoB
RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.459
AEK23045.1
Conserved hypothetical protein.
  
 
 0.413
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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