STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (357 aa)    
Predicted Functional Partners:
prmC
tRNA(m7G46)-methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
 
 
 0.979
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.954
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 
 0.945
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
 
 
 0.930
AEK22561.1
Ribosomal protein S7 (G3DSA:1.10.455.10); Ribosomal protein S7 (PF00177); Ribosomal protein S7 (SSF47973); Ribosomal protein S7 (PTHR11205); Ribosomal protein S7, bacterial-type (TIGR01029); Protein involved in structural constituent of ribosome and translation.
  
 
 0.927
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
 
 0.921
rplQ
Ribosomal protein L17 (MF_01368); Ribosomal protein L17 (G3DSA:3.90.1030.10); RIBOSOMAL PROTEIN L17 (PTHR14413:SF3); Ribosomal protein L17 (PF01196); Ribosomal protein L17 (PS01167); Ribosomal protein L17 (TIGR00059); Ribosomal protein L17 (PTHR14413); Ribosomal protein L17 (SSF64263); Protein involved in structural constituent of ribosome and translation.
 
 
 0.921
AEK22538.1
Ribosomal protein L27 (PR00063); Ribosomal protein L27 (PTHR15893); Ribosomal protein L27 (SSF110324); Ribosomal protein L27 (PD003114); Ribosomal protein L27, conserved site (PS00831); Ribosomal protein L27 (PF01016); Protein involved in structural constituent of ribosome and translation.
 
 
 0.909
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
 
 0.905
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 
 
 0.904
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.